ALLOWED_TAGS
HAVE_BCFTOOLS
VariantFileFilledInTags
run_bcftools_fill_tags()
vcf_dataframe()
vep_api_dataframe()
API_LONG_RETRY
Assembly
HTS_COMPRESSED_VALS
VCF_MASK_COLS
import_vep_data()
query_vep_api()
vcf_rows()
vcf_to_vep_query_data()
BackportStrEnum
CiStrEnum
default_vep_cli_json_extractor()
default_vep_response_extractor()
platypus_vcf_record_extractor()
FakePlatypusVcfFile
FakeVcfFile
TestWithTempDir
MafMethod
maf_from_samples()
maf_from_fr()
maf_from_bcftools()
maf_from_method()
API_DF_SCHEMA
VCF_DF_SCHEMA
platypus_dataframe()
Module for argument parsing and CLI functionality.