• Goals
  • Design
    • CLI
    • Python Library
      • “Bring your own extractor”
    • Ensembl API
  • Installation
  • Usage
  • API Reference
    • varona
      • varona.data
      • varona.bcftools
        • ALLOWED_TAGS
        • HAVE_BCFTOOLS
        • VariantFileFilledInTags
        • run_bcftools_fill_tags()
      • varona.cli
        • VaronaArgumentParser
      • varona.dataframe
        • vcf_dataframe()
        • vep_api_dataframe()
      • varona.ensembl
        • API_LONG_RETRY
        • Assembly
        • HTS_COMPRESSED_VALS
        • VCF_MASK_COLS
        • import_vep_data()
        • query_vep_api()
        • vcf_rows()
        • vcf_to_vep_query_data()
      • varona.enum
        • BackportStrEnum
        • CiStrEnum
      • varona.extract
        • default_vep_cli_json_extractor()
        • default_vep_response_extractor()
        • platypus_vcf_record_extractor()
      • varona.fake_vcf
        • FakePlatypusVcfFile
        • FakeVcfFile
        • TestWithTempDir
      • varona.maf
        • MafMethod
        • maf_from_samples()
        • maf_from_fr()
        • maf_from_bcftools()
        • maf_from_method()
      • varona.platypus
        • API_DF_SCHEMA
        • VCF_DF_SCHEMA
        • platypus_dataframe()
      • varona.utils
        • varona.utils.cli_split
        • varona.utils.misc
        • varona.utils.split
        • varona.utils.fix_vcf
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